#### fake-data (11)

- A simple ggplot of some measure against depth - September 10, 2018
- Paired line plots - January 22, 2019
- The statistical significance filter - April 17, 2019
- GLM vs. t-tests vs. non-parametric tests if all we care about is NHST -- Update - May 30, 2019
- What is the bias in the estimation of an effect given an omitted interaction term? - July 31, 2019
- What is the consequence of a Shapiro-Wilk test-of-normality filter on Type I error and Power? - August 8, 2019
- A comment on the novel transformation of the response in " Senolytics decrease senescent cells in humans: Preliminary report from a clinical trial of Dasatinib plus Quercetin in individuals with diabetic kidney disease" - October 2, 2019
- Normalization results in regression to the mean and inflated Type I error conditional on the reference values - October 16, 2019
- Using Wright's rules and a DAG to compute the bias of an effect when we measure proxies for X and Y - February 7, 2020
- Analyzing longitudinal data -- a simple pre-post design - March 19, 2020
- Bootstrap confidence intervals when sample size is really small - June 1, 2020

#### nhst (9)

- On alpha - April 23, 2018
- GLM vs. t-tests vs. non-parametric tests if all we care about is NHST - January 7, 2019
- Should we be skeptical of a "large" effect size if p > 0.05? - May 28, 2019
- GLM vs. t-tests vs. non-parametric tests if all we care about is NHST -- Update - May 30, 2019
- What does cell biology data look like? - June 9, 2019
- Is the power to test an interaction effect less than that for a main effect? - July 2, 2019
- What is the consequence of a Shapiro-Wilk test-of-normality filter on Type I error and Power? - August 8, 2019
- Analyzing longitudinal data -- a simple pre-post design - March 19, 2020
- What is the consequence of normalizing by each case in the control? - May 18, 2020

#### p-values (9)

- What is the range of reasonable P-values given a two standard error difference in means? - March 18, 2018
- Textbook error 101 -- A low p-value for the full model does not mean that the model is a good predictor of the response - September 11, 2018
- The statistical significance filter - April 17, 2019
- Should we be skeptical of a "large" effect size if p > 0.05? - May 28, 2019
- GLM vs. t-tests vs. non-parametric tests if all we care about is NHST -- Update - May 30, 2019
- Is the power to test an interaction effect less than that for a main effect? - July 2, 2019
- What is the consequence of a Shapiro-Wilk test-of-normality filter on Type I error and Power? - August 8, 2019
- Can a linear model reproduce a Welch t-test? - October 27, 2019
- What is the consequence of normalizing by each case in the control? - May 18, 2020

#### categorical-x (8)

- Interaction plots with ggplot2 - October 15, 2018
- Covariate adjustment in randomized experiments - April 12, 2019
- Is the power to test an interaction effect less than that for a main effect? - July 2, 2019
- What is the bias in the estimation of an effect given an omitted interaction term? - July 31, 2019
- Linear models with a covariate ("ANCOVA") - October 21, 2020
- How to estimate synergism or antagonism - November 3, 2020
- What is an interaction? - November 4, 2020
- How to make plots with factor levels below the x-axis (bench-biology style) - December 27, 2020

#### ancova (7)

- Bias in pre-post designs -- An example from the Turnbaugh et al (2006) mouse fecal transplant study - March 8, 2018
- Covariate adjustment in randomized experiments - April 12, 2019
- Blocking vs. covariate adjustment - April 27, 2019
- Normalization results in regression to the mean and inflated Type I error conditional on the reference values - October 16, 2019
- Analyzing longitudinal data -- a simple pre-post design - March 19, 2020
- ANCOVA when the covariate is a mediator affected by treatment - July 12, 2020
- Linear models with a covariate ("ANCOVA") - October 21, 2020

#### anova (6)

- Is the power to test an interaction effect less than that for a main effect? - July 2, 2019
- Estimate of marginal ("main") effects instead of ANOVA for factorial experiments - November 29, 2019
- Type 3 ANOVA in R -- an easy way to publish wrong tables - October 23, 2020
- How to estimate synergism or antagonism - November 3, 2020
- What is an interaction? - November 4, 2020
- How to make plots with factor levels below the x-axis (bench-biology style) - December 27, 2020

#### generalized-linear-models (6)

- Should the model-averaged prediction be computed on the link or response scale in a GLM? - May 13, 2018
- GLM vs. t-tests vs. non-parametric tests if all we care about is NHST - January 7, 2019
- GLM vs. t-tests vs. non-parametric tests if all we care about is NHST -- Update - May 30, 2019
- What does cell biology data look like? - June 9, 2019
- "Nested" random factors in mixed (multilevel or hierarchical) models - November 30, 2019
- Bootstrap confidence intervals when sample size is really small - June 1, 2020

#### interaction (6)

- Interaction plots with ggplot2 - October 15, 2018
- Is the power to test an interaction effect less than that for a main effect? - July 2, 2019
- Estimate of marginal ("main") effects instead of ANOVA for factorial experiments - November 29, 2019
- How to estimate synergism or antagonism - November 3, 2020
- What is an interaction? - November 4, 2020
- How to make plots with factor levels below the x-axis (bench-biology style) - December 27, 2020

#### effect-size (5)

- Combining data, distribution summary, model effects, and uncertainty in a single plot - March 27, 2018
- Reporting effects as relative differences...with a confidence interval - November 14, 2018
- Should we be skeptical of a "large" effect size if p > 0.05? - May 28, 2019
- What is the bias in the estimation of an effect given an omitted interaction term? - July 31, 2019
- Normalization results in regression to the mean and inflated Type I error conditional on the reference values - October 16, 2019

#### linear-mixed-model (5)

- Reanalyzing data from Human Gut Microbiota from Autism Spectrum Disorder Promote Behavioral Symptoms in Mice - June 3, 2019
- Analyze the mean (or median) and not the max response - June 25, 2019
- Paired t-test as a special case of linear model and hierarchical (linear mixed) model - June 25, 2019
- "Nested" random factors in mixed (multilevel or hierarchical) models - November 30, 2019
- Analyzing longitudinal data -- a simple pre-post design - March 19, 2020

#### power (5)

- Should we be skeptical of a "large" effect size if p > 0.05? - May 28, 2019
- GLM vs. t-tests vs. non-parametric tests if all we care about is NHST -- Update - May 30, 2019
- Is the power to test an interaction effect less than that for a main effect? - July 2, 2019
- Analyzing longitudinal data -- a simple pre-post design - March 19, 2020

#### causal-graph (4)

- Expected covariances in a causal network - January 3, 2019
- What is the bias in the estimation of an effect given an omitted interaction term? - July 31, 2019
- Using Wright's rules and a DAG to compute the bias of an effect when we measure proxies for X and Y - February 7, 2020
- ANCOVA when the covariate is a mediator affected by treatment - July 12, 2020

#### linear-model (4)

- Can a linear model reproduce a Welch t-test? - October 27, 2019
- ANCOVA when the covariate is a mediator affected by treatment - July 12, 2020
- Linear models with a covariate ("ANCOVA") - October 21, 2020
- What is an interaction? - November 4, 2020

#### microbiome (4)

- Bias in pre-post designs -- An example from the Turnbaugh et al (2006) mouse fecal transplant study - March 8, 2018
- Reanalyzing data from Human Gut Microbiota from Autism Spectrum Disorder Promote Behavioral Symptoms in Mice - June 3, 2019
- Analyze the mean (or median) and not the max response - June 25, 2019
- Paired t-test as a special case of linear model and hierarchical (linear mixed) model - June 25, 2019

#### wright-style-path-analysis (4)

- Expected covariances in a causal network - January 3, 2019
- What is the bias in the estimation of an effect given an omitted interaction term? - July 31, 2019
- Using Wright's rules and a DAG to compute the bias of an effect when we measure proxies for X and Y - February 7, 2020
- ANCOVA when the covariate is a mediator affected by treatment - July 12, 2020

#### bias (3)

- Bias in pre-post designs -- An example from the Turnbaugh et al (2006) mouse fecal transplant study - March 8, 2018
- What is the bias in the estimation of an effect given an omitted interaction term? - July 31, 2019

#### model-averaged-coefficients (3)

- Model-averaged coefficients of a GLM - May 4, 2018
- An even more compact defense of coefficient model averaging - May 7, 2018
- On model averaging the coefficients of linear models - May 10, 2018

#### confidence-interval (2)

- Reporting effects as relative differences...with a confidence interval - November 14, 2018
- Bootstrap confidence intervals when sample size is really small - June 1, 2020

#### covariance (2)

- Expected covariances in a causal network - January 3, 2019
- What is the bias in the estimation of an effect given an omitted interaction term? - July 31, 2019

#### antagonism (1)

- How to estimate synergism or antagonism - November 3, 2020

#### blocking (1)

- Blocking vs. covariate adjustment - April 27, 2019

#### clda (1)

- Analyzing longitudinal data -- a simple pre-post design - March 19, 2020

#### correlation (1)

- Expected covariances in a causal network - January 3, 2019

#### covariates (1)

- Linear models with a covariate ("ANCOVA") - October 21, 2020

#### data.table (1)

- Melting a list of columns - April 27, 2020

#### glm (1)

- Model-averaged coefficients of a GLM - May 4, 2018

#### melt (1)

- Melting a list of columns - April 27, 2020

#### repeated-measures (1)

- Paired line plots - January 22, 2019

#### synergism (1)

- How to estimate synergism or antagonism - November 3, 2020